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edu
edu.arizona
edu.arizona.sista
edu.arizona.sista.assembly
(class)
Activation
(object)
AssembleFromDataset
(object)
(class)
AssemblyExporter
(object)
(class)
AssemblyManager
(trait)
AssemblyModification
(object)
AssemblyRunner
(object)
(trait)
AssemblySieve
(class)
Complex
(trait)
ComplexEvent
(object)
Constraints
(trait)
Entity
(trait)
EntityEventRepresentation
(case class)
EntityLabel
(trait)
Event
(case class)
MutantEntity
(case class)
PrecedenceRelation
(case class)
PTM
(class)
Regulation
(case class)
Row
(object)
RunAssembly
(class)
SieveMixture
(class)
Sieves
(object)
SieveUtils
(class)
SimpleEntity
(class)
SimpleEvent
edu.arizona.sista.coref
(class)
AntecedentSelector
(class)
ComposedCorefFlow
(class)
Coref
(object)
(trait)
CorefFlow
(object)
CorefUtils
(class)
LinearSelector
(class)
Links
edu.arizona.sista.reach
(class)
ComposedDarpaFlow
(object)
(class)
DarpaActions
(object)
(trait)
DarpaFlow
(class)
DarpaLinks
(object)
HypothesisHandler
(object)
MentionFilter
(object)
NegationHandler
(object)
PaperReader
(object)
(class)
ReachCLI
(object)
ReachCSV
(object)
ReachShell
(object)
(class)
ReachSystem
(object)
ReadPapers
(object)
RuleReader
edu.arizona.sista.reach.apis
(object)
Api
(object)
ApiRuler
(object)
Ruler
(class)
RulerResults
(class)
Token
edu.arizona.sista.reach.apis.open
(class)
OpenActions
(class)
OpenSystem
edu.arizona.sista.reach.brat
(trait)
Annotation
(case class)
BinaryAttribute
(object)
Brat
(case class)
Equivalence
(case class)
Event
(object)
(class)
IdTracker
(case class)
MultiValueAttribute
(case class)
Normalization
(case class)
Relation
(case class)
TextBound
edu.arizona.sista.reach.context
(class)
BidirectionalPaddingContext
(class)
BoundedPaddingContext
(trait)
Context
(object)
(trait)
ContextEngine
(object)
ContextEngineFactory
(class)
DummyContextEngine
(class)
FillingContext
(class)
PaddingContext
edu.arizona.sista.reach.context.rulebased
(class)
RuleBasedContextEngine
edu.arizona.sista.reach.extern
edu.arizona.sista.reach.extern.export
(class)
IncrementingCounter
(class)
IncrementingId
(object)
(trait)
JsonOutputter
(class)
MentionCacheValue
(object)
(class)
MentionManager
edu.arizona.sista.reach.extern.export.context
(class)
PandasOutput
edu.arizona.sista.reach.extern.export.fries
(class)
FriesOutput
edu.arizona.sista.reach.extern.export.indexcards
(object)
(class)
IndexCardOutput
edu.arizona.sista.reach.extern.inward
(trait)
ExternalKBAccessor
edu.arizona.sista.reach.fragmenter
(class)
BioPAXElementUtils
(class)
CatalysisUtils
(class)
ComplexUtils
(class)
ControlUtils
(class)
ConversionUtils
(class)
EntityReferenceUtils
(class)
EntityUtils
(object)
(class)
Fragmenter
(object)
FragmenterApp
(object)
Labeler
(class)
NamedUtils
(class)
PathwayUtils
(class)
PhysicalEntityUtils
(class)
ProcessUtils
(class)
SimplePhysicalEntityUtils
(class)
XReferrableUtils
(class)
XrefUtils
edu.arizona.sista.reach.grounding
(class)
AdHocIMKBFactory
(object)
(class)
AzFailsafeKBML
(object)
EntityChecker
(class)
IMKBFamilyLookup
(class)
IMKBFamilyMentionLookup
(class)
IMKBLookup
(class)
IMKBMentionLookup
(class)
IMKBMetaInfo
(class)
IMKBOrganCellTypeLookup
(class)
IMKBOrganCellTypeMentionLookup
(class)
IMKBProteinLookup
(class)
IMKBProteinMentionLookup
(class)
IncrementingCounter
(class)
InMemoryKB
(trait)
KBAltLookup
(trait)
KBAltMentionLookup
(object)
(class)
KBEntry
(trait)
KBKeyTransforms
(trait)
KBLookup
(trait)
KBMentionLookup
(class)
KBResolution
(object)
ReachContextKBLister
(object)
(class)
ReachEntityLookup
(class)
ReachGrounder
(object)
ReachIMKBLookups
(object)
ReachIMKBMentionLookups
(object)
ReachKBConstants
(object)
(trait)
ReachKBKeyTransforms
(object)
ReachKBUtils
(object)
ReachRLKBLookups
(class)
ReverseLookupKB
(class)
RLKBFactory
(object)
(trait)
Speciated
(class)
TsvIMKBFactory
edu.arizona.sista.reach.mentions
(trait)
Anaphoric
(class)
BioEventMention
(object)
BioMention
(class)
BioRelationMention
(class)
BioTextBoundMention
(class)
CorefEventMention
(object)
CorefMention
(class)
CorefRelationMention
(class)
CorefTextBoundMention
(trait)
Display
(case class)
EventSite
(trait)
Grounding
(case class)
Hypothesis
(class)
MentionOps
(trait)
Modification
(trait)
Modifications
(case class)
Mutant
(case class)
Negation
(case class)
PTM
edu.arizona.sista.reach.nxml
(case class)
FriesEntry
(object)
MyXML
(case class)
NxmlDoc
(case class)
NxmlEntry
(class)
NxmlReader
(object)
PreprocessNxml
(object)
RunNxml2Fries
edu.arizona.sista.reach.nxml.indexer
(object)
(class)
NxmlIndexer
(object)
(class)
NxmlSearcher
edu.arizona.sista.reach.utils
(object)
BratUtils
(case class)
BRI
(object)
(class)
CSVParser
(object)
DependencyUtils
(object)
FileReader
(class)
PathFinder
edu.arizona.sista.utils
(class)
DateUtils