edu.arizona.sista.reach.fragmenter

Fragmenter

Related Docs: object Fragmenter | package fragmenter

class Fragmenter extends AnyRef

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. Fragmenter
  2. AnyRef
  3. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new Fragmenter(is: InputStream)

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  5. lazy val biochemicalReactions: Set[BiochemicalReaction]

  6. lazy val catalysis: Set[Catalysis]

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. lazy val complexAssemblies: Set[ComplexAssembly]

  9. lazy val controls: Set[Control]

  10. lazy val conversions: Set[Conversion]

  11. lazy val degradations: Set[Degradation]

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  15. lazy val geneticInteractions: Set[GeneticInteraction]

  16. def getByRdfId(id: String): Option[BioPAXElement]

  17. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  18. def getEntityReferenceById(id: String): Set[_ <: EntityReference]

  19. def getObjects[T <: BioPAXElement](implicit arg0: ClassTag[T]): Set[T]

  20. val handler: SimpleIOHandler

  21. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  22. lazy val interactions: Set[Interaction]

  23. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  24. val model: Model

  25. lazy val modulations: Set[Modulation]

  26. lazy val molecularInteractions: Set[MolecularInteraction]

  27. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  28. final def notify(): Unit

    Definition Classes
    AnyRef
  29. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  30. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  31. lazy val templateReactionRegulations: Set[TemplateReactionRegulation]

  32. lazy val templateReactions: Set[TemplateReaction]

  33. def toString(): String

    Definition Classes
    AnyRef → Any
  34. lazy val transportWithBiochemicalReactions: Set[TransportWithBiochemicalReaction]

  35. lazy val transports: Set[Transport]

  36. lazy val unificationXrefs: Set[UnificationXref]

  37. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AnyRef

Inherited from Any

Ungrouped