edu.arizona.sista.reach.grounding

ReachEntityLookup

Related Docs: object ReachEntityLookup | package grounding

class ReachEntityLookup extends AnyRef

Class which implements project internal methods to ground entities. Written by Tom Hicks. 11/9/2015. Last Modified: Restrict to bio mentions. Remove unused state arguments. Fix: bioprocess label.

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Instance Constructors

  1. new ReachEntityLookup()

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(mentions: Seq[BioMention]): Seq[BioMention]

    Use project specific KBs to ground and augment given mentions.

  5. final def asInstanceOf[T0]: T0

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  6. val azFailsafeSeq: KBSearchSequence

    KB search sequence to use for Fallback grounding: when all others fail.

  7. val bioProcessSeq: KBSearchSequence

  8. val cellComponentSeq: KBSearchSequence

  9. val cellLineSeq: KBSearchSequence

  10. val cellTypeSeq: KBSearchSequence

  11. val chemicalSeq: KBSearchSequence

  12. def clone(): AnyRef

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  13. val config: Config

  14. final def eq(arg0: AnyRef): Boolean

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  15. def equals(arg0: Any): Boolean

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  16. var extraKBs: KBSearchSequence

    Variable to hold additional "adhoc" KBs which are dynamically added to search.

  17. val familySeq: KBSearchSequence

  18. def finalize(): Unit

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  19. final def getClass(): Class[_]

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  20. def hashCode(): Int

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  21. final def isInstanceOf[T0]: Boolean

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  22. final def ne(arg0: AnyRef): Boolean

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  23. final def notify(): Unit

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  24. final def notifyAll(): Unit

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  25. val organSeq: KBSearchSequence

  26. val proteinSeq: KBSearchSequence

  27. val speciesSeq: KBSearchSequence

  28. final def synchronized[T0](arg0: ⇒ T0): T0

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  29. def toString(): String

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  30. final def wait(): Unit

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  31. final def wait(arg0: Long, arg1: Int): Unit

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  32. final def wait(arg0: Long): Unit

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