edu.arizona.sista.reach.grounding

Speciated

Related Docs: trait Speciated | package grounding

object Speciated extends Speciated

Trait Companion Object allows Mixin OR Import pattern.

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Type Members

  1. type SpeciesNameSet = Set[String]

    Species name sets.

    Species name sets.

    Definition Classes
    Speciated

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. val Human: String

    Default value for human species string.

  5. val HumanLabels: SpeciesNameSet

    A set of label strings for humans, found in KBs.

  6. val HumanNsId: String

    Default value for human species namespace:ID string (NCBI Taxonomy).

  7. def SpeciesNameSet(xs: String*): Set[String]

    Definition Classes
    Speciated

  8. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. def containsHumanNsId(nsIdSeq: Seq[String]): Boolean

    Tell whether the given sequence of namespace/ID strings contains a human nsId.

    Tell whether the given sequence of namespace/ID strings contains a human nsId.

    Definition Classes
    Speciated

  11. def containsHumanSpecies(speciesSeq: Seq[String]): Boolean

    Tell whether the given sequence of species strings contain a human species label.

    Tell whether the given sequence of species strings contain a human species label.

    Definition Classes
    Speciated

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  16. def hasHumanNsId(nsId: String): Boolean

    Tell whether the given namespace/ID string is an ID for humans or not.

    Tell whether the given namespace/ID string is an ID for humans or not.

    Definition Classes
    Speciated

  17. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  18. def isHumanSpecies(species: String): Boolean

    Tell whether the given species string is label for humans or not.

    Tell whether the given species string is label for humans or not.

    Definition Classes
    Speciated

  19. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  20. def isMemberOf(species: String, speciesSet: SpeciesNameSet): Boolean

    Tell whether the given species string is a member of the given set of species.

    Tell whether the given species string is a member of the given set of species.

    Definition Classes
    Speciated

  21. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  22. final def notify(): Unit

    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  24. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  25. def toString(): String

    Definition Classes
    AnyRef → Any

  26. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Speciated

Inherited from AnyRef

Inherited from Any

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