ReachKBConstants

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final def !=(arg0: Any): Boolean

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final def ##(): Int

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final def ==(arg0: Any): Boolean

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val AllKeysStopSuffixes: Seq[String]

The set of words to remove from all keys to create a lookup key.
val ContextCellLineFilename: String

Filename of the contenxt cell lines file
val ContextCellTypeFilename: String

Filename of the context cell types file
val ContextOrganFilename: String

Filename of the context organs file
val ContextSpeciesFilename: String

Filename of the context species file
val DefaultNamespace: String

The default namespace string for KBs.
val FamilyStopSuffixes: Seq[String]

The set of words to remove from a key to create a protein family lookup key.
val GendCellLocationFilename: String

Filename of the cellular location file generated by the entity checker.
val GendCellLocationPrefix: String

Prefix string for cellular location IDs generated by the entity checker.
val GendChemicalFilename: String

Filename of the small molecule file generated by the entity checker.
val GendChemicalPrefix: String

Prefix string for small molecule IDs generated by the entity checker.
val GendProteinFilename: String

Filename of the protein/family file generated by the entity checker.
val GendProteinPrefix: String

Prefix string for protein/family IDs generated by the entity checker.
val KBDirFilePath: String

File Path to the directory which holds the entity knowledge bases.
val KBDirResourcePath: String

Resource Path to the directory which holds the entity knowledge bases.
val KeyCharactersToRemove: Set[Char]

The set of characters to remove from the text to create a lookup key.
val ManualCellLocationFilename: String

Filename of the manually maintained cellular location file.
val ManualChemicalFilename: String

Filename of the manually maintained small molecule file.
val ManualProteinFamilyFilename: String

Filename of the manually maintained protein family file.
val ManualProteinFilename: String

Filename of the manually maintained protein file.
val NamespaceIdSeparator: String

The string used to separate a namespace and an ID.
val ProteinDomainSuffixesFilename: String

Filename of a file containing just Protein Domain suffixes; one per line.
val ProteinStopSuffixes: Seq[String]

The set of words to remove from a key to create a protein lookup key.
val StaticBioProcessFilename: String

Filename of the static bio processes file.
val StaticCellLocation2Filename: String

Filename of the alternate static cellular location file.
val StaticCellLocationFilename: String

Filename of the static cellular location file.
val StaticChemicalFilename: String

Filename of the static small molecule (chemical) file.
val StaticMetaboliteFilename: String

Filename of the static small molecule (metabolite) file.
val StaticProteinFamilyFilename: String

Filename of the static protein family file.
val StaticProteinFilename: String

Filename of the static protein file.
val StaticTissueTypeFilename: String

Filename of the static tissue type file.
final def asInstanceOf[T0]: T0

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Related Doc: package grounding

object ReachKBConstants

Value Members

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

val AllKeysStopSuffixes: Seq[String]

val ContextCellLineFilename: String

val ContextCellTypeFilename: String

val ContextOrganFilename: String

val ContextSpeciesFilename: String

val DefaultNamespace: String

val FamilyStopSuffixes: Seq[String]

val GendCellLocationFilename: String

val GendCellLocationPrefix: String

val GendChemicalFilename: String

val GendChemicalPrefix: String

val GendProteinFilename: String

val GendProteinPrefix: String

val KBDirFilePath: String

val KBDirResourcePath: String

val KeyCharactersToRemove: Set[Char]

val ManualCellLocationFilename: String

val ManualChemicalFilename: String

val ManualProteinFamilyFilename: String

val ManualProteinFilename: String

val NamespaceIdSeparator: String

val ProteinDomainSuffixesFilename: String

val ProteinStopSuffixes: Seq[String]

val StaticBioProcessFilename: String

val StaticCellLocation2Filename: String

val StaticCellLocationFilename: String

val StaticChemicalFilename: String

val StaticMetaboliteFilename: String

val StaticProteinFamilyFilename: String

val StaticProteinFilename: String

val StaticTissueTypeFilename: String

final def asInstanceOf[T0]: T0

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

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