FillingContext

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

5. def assign(mentions: Seq[BioMention]): Seq[BioMention]

   

   assigns context to mentions given current state of the engine

   assigns context to mentions given current state of the engine

   Definition Classes

   RuleBasedContextEngine → ContextEngine

6. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

7. def contextTypes: Seq[String]

   

   Attributes

   protected

   Definition Classes

   BoundedPaddingContext

8. def densifyFeatures: Seq[Seq[Double]]

   

   Attributes

   protected

   Definition Classes

   RuleBasedContextEngine

9. var docOffsets: Map[String, Int]

   

   Attributes

   protected

   Definition Classes

   RuleBasedContextEngine

10. var entries: Seq[FriesEntry]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

11. var entryFeatures: Seq[Array[(String, Double)]]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

12. def entryFeaturesNames: Seq[String]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

13. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

14. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

15. def extractEntryFeatures(entry: FriesEntry): Array[(String, Double)]

    

    Attributes

    protected

    Definition Classes

    BoundedPaddingContext → RuleBasedContextEngine

16. var fallbackSpecies: Option[String]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

17. def featureMatrix: Seq[Seq[Double]]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

18. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

19. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

20. def getObservationsMatrixStrings: Seq[String]

    

    Definition Classes

    RuleBasedContextEngine

21. def getStatesMatrixStrings: Seq[String]

    

    Definition Classes

    RuleBasedContextEngine

22. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

23. def infer(entries: Seq[FriesEntry], documents: Seq[Document], mentionsPerEntry: Seq[Seq[BioMention]]): Unit

    

    initializes any data structure that needs to be initialized

    initializes any data structure that needs to be initialized

    Definition Classes

    RuleBasedContextEngine → ContextEngine

24. def inferContext: List[Seq[Int]]

    

    Attributes

    protected

    Definition Classes

    FillingContext → BoundedPaddingContext → RuleBasedContextEngine

25. var inferedLatentSparseMatrix: List[Seq[Int]]

    

    Definition Classes

    RuleBasedContextEngine

26. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

27. var latentSparseMatrix: List[Seq[Int]]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

28. def latentStateMatrix: Seq[Seq[Boolean]]

    

    Definition Classes

    RuleBasedContextEngine

29. def latentVocabulary: Iterable[String]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

30. var mentions: Seq[Seq[BioMention]]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

31. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

32. final def notify(): Unit

    

    Definition Classes

    AnyRef

33. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

34. def observationVocavulary: Iterable[String]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

35. var observedSparseMatrix: Seq[Seq[Int]]

    

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

36. final def padContext(prevStep: Seq[Int], remainingSteps: List[Seq[Int]], repetitions: Seq[Int], bound: Int): List[Seq[Int]]

    

    Attributes

    protected

    Definition Classes

    BoundedPaddingContext

37. def preprocessedLatentStateMatrix: Seq[Seq[Boolean]]

    

    Definition Classes

    RuleBasedContextEngine

38. def query(line: Int): Map[String, Seq[String]]

    

    * Queries the context of the specified line line.

    * Queries the context of the specified line line. Returns a sequence of tuples where the first element is the type of context and the second element a grounded id

    Attributes

    protected

    Definition Classes

    RuleBasedContextEngine

39. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

40. def toString(): String

    

    Definition Classes

    AnyRef → Any

41. def untie(entities: Seq[(String, String)]): (String, String)

    

    Attributes

    protected

    Definition Classes

    BoundedPaddingContext

42. def update(mentions: Seq[BioMention]): Unit

    

    updates those data structures with any new info

    updates those data structures with any new info

    Definition Classes

    RuleBasedContextEngine → ContextEngine

43. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

44. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

45. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )