GendCellLocationFilename
ReachKBConstants
GendCellLocationPrefix
ReachKBConstants
GendChemicalFilename
ReachKBConstants
GendChemicalPrefix
ReachKBConstants
GendProteinFilename
ReachKBConstants
GendProteinPrefix
ReachKBConstants
Grounding
mentions
GroundingID
assembly
genNextId
IncrementingId
genNextIdWithFormat
IncrementingId
gendCellLocationKBML
ReachIMKBMentionLookups
gendChemicalKBML
ReachIMKBMentionLookups
gendProteinFamilyKBML
ReachIMKBMentionLookups
gendProteinKBML
ReachIMKBMentionLookups
genericEntityReferences
SimplePhysicalEntityUtils
genericInside
CorefUtils
geneticInteractions
Fragmenter
getActivations
AssemblyManager
getAllThemes
AssemblyManager
getByRdfId
Fragmenter
getComplex
AssemblyManager
getComplexes
AssemblyManager
getContextKey
ContextEngine
getDescription
ContextEngine
getEER
AssemblyManager
getEERs
AssemblyManager
getEntityReferenceById
Fragmenter
getEquivalentEERs
AssemblyManager
getEventLabel
AssemblyExporter
getEventRows
AssemblyExporter
getEvidence
AssemblyManager
getFileName
NxmlIndexer
getID
AssemblyManager
getId
Brat
IdTracker
getIndex
ContextEngine
getKey
ContextEngine
getLookupKey
ExternalKBAccessor
getMentionsFromStandoff
BratUtils
getMentionsfromAnnotations
BratUtils
getModificationLabel
DarpaActions
getModifiers
DarpaActions
getObjects
Fragmenter
getObservationsMatrixStrings
RuleBasedContextEngine
getPTMrepresentation
AssemblyExporter
getPTMs
SimpleEntity
getPolarityLabel
AssemblyManager
getPrecedenceRelations
AssemblyManager
getRegulation
AssemblyManager
getRegulations
AssemblyManager
getResolvedForm
AssemblyManager
getRows
AssemblyExporter
getSimpleEntities
AssemblyManager
getSimpleEntitiesByModification
AssemblyManager
getSimpleEntity
AssemblyManager
getSimpleEvent
AssemblyManager
getSimpleEvents
AssemblyManager
getStatesMatrixStrings
RuleBasedContextEngine
getText
AssemblyExporter
getTextualEvidence
Row
getTokenCharOffsets
BratUtils
getTokenCharOffsetsMap
BratUtils
getUniqueId
IdTracker
groundArguments
ReachGrounder
groundAsHuman
ReachGrounder
groundBySpecies
ReachGrounder
groundMention
ReachGrounder
grounder
ReachSystem
grounding
SimpleEntity
reach
Grounding
grounding2Text
AssemblyExporter
groundingMatch
DarpaLinks
group
Coref
groupMentionsByDocument
ReachSystem
groupedEERs
AssemblyManager