Species name sets.
Species name sets.
Tell whether the given sequence of namespace/ID strings contains a human nsId.
Tell whether the given sequence of namespace/ID strings contains a human nsId.
Tell whether the given sequence of species strings contain a human species label.
Tell whether the given sequence of species strings contain a human species label.
Tell whether the given namespace/ID string is an ID for humans or not.
Tell whether the given namespace/ID string is an ID for humans or not.
Tell whether the given mention is grounded from a protein family KB or not.
Tell whether the given species string is label for humans or not.
Tell whether the given species string is label for humans or not.
Tell whether the given species string is a member of the given set of species.
Tell whether the given species string is a member of the given set of species.
Tell whether the given mention is grounded from a protein KB or not.
Return a file for the given filename in the knowledge bases directory.
Return a file for the given filename in the current user working directory.
Return a formatted string containing this entry's namespace and ID.
Return a resource path string for the given filename in the knowledge bases directory.
Return a path string for the given filename in the current user working directory.
Read and return all the lines from the specified file.
Filter sequence to return only resolutions (sorted) with the given species.
Filter sequence to return only resolutions (sorted) without a species in the given set.
Filter sequence to return only resolutions (sorted) with a species in the given set.
Filter sequence to return human resolutions (sorted).
Filter sequence to return resolutions which have no species.
Filter sequence to return only resolutions (sorted) without the given species.
Filter sequence to return only resolutions (sorted) with a non-human species.
Return a Scala Source object created from the given resource path string.
Return a Scala Source object created from the given resource path string. If the resource path ends with ".gz" the source is created around a gzip input stream.
Convert a single row string from a TSV file to a sequence of string fields.
Check for required fields in one row of a TSV input file.
Support methods for writing local KB accessors. Written by Tom Hicks. 10/23/2015. Last Modified: Replace nsId selectors with species set selectors.