ReachIMKBMentionLookups

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val AdHocIMKBFactory: AdHocIMKBFactory

   

   Single factory instance to generate AdHoc IMKB classes.

5. val ContextCellLine: IMKBMentionLookup

   

6. val ContextCellType: IMKBOrganCellTypeMentionLookup

   

7. val ContextOrgan: IMKBMentionLookup

   

8. val ContextSpecies: IMKBMentionLookup

   

9. val ManualCellLocation: IMKBMentionLookup

   

10. val ManualChemical: IMKBMentionLookup

    

11. val ManualProtein: IMKBProteinMentionLookup

    

12. val ManualProteinFamily: IMKBFamilyMentionLookup

    

13. val ModelGendCellLocation: IMKBMentionLookup

    

14. val ModelGendChemical: IMKBMentionLookup

    

15. val ModelGendProteinAndFamily: IMKBProteinMentionLookup

    

16. val StaticBioProcess: IMKBMentionLookup

    

17. val StaticCellLocation: IMKBMentionLookup

    

18. val StaticCellLocation2: IMKBMentionLookup

    

19. val StaticChemical: IMKBMentionLookup

    

20. val StaticMetabolite: IMKBMentionLookup

    

21. val StaticProtein: IMKBProteinMentionLookup

    

22. val StaticProteinFamily: IMKBFamilyMentionLookup

    

23. val TsvIMKBFactory: TsvIMKBFactory

    

    Single factory instance to generate Tsv IMKB classes.

24. final def asInstanceOf[T0]: T0

    

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25. def clone(): AnyRef

    

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26. def contextCellLineKBML: IMKBMentionLookup

    

    KB accessor to resolve cell lines via a context KB.

27. def contextCellTypeKBML: IMKBOrganCellTypeMentionLookup

    

    KB accessor to resolve cell types via a context KB.

    KB accessor to resolve cell types via a context KB. Uses alternate key lookups for organ to cell type inference.

28. def contextOrganKBML: IMKBMentionLookup

    

    KB accessor to resolve organ names via a context KB.

29. def contextSpeciesKBML: IMKBMentionLookup

    

    KB accessor to resolve species names via a context KB.

30. final def eq(arg0: AnyRef): Boolean

    

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31. def equals(arg0: Any): Boolean

    

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32. def finalize(): Unit

    

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33. def gendCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via KBs generated from the BioPax model.

34. def gendChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via KBs generated from the BioPax model.

35. def gendProteinFamilyKBML: IMKBFamilyMentionLookup

    

    KB accessor to resolve protein family names via KBs generated from the BioPax model.

36. def gendProteinKBML: IMKBProteinMentionLookup

    

    KB accessor to resolve protein names via KBs generated from the BioPax model.

37. final def getClass(): Class[_]

    

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38. def hashCode(): Int

    

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39. final def isInstanceOf[T0]: Boolean

    

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40. def manualCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via manually maintained KBs.

41. def manualChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via manually maintained KBs.

42. def manualProteinFamilyKBML: IMKBFamilyMentionLookup

    

    KB accessor to resolve protein names via manually maintained KBs.

43. def manualProteinKBML: IMKBProteinMentionLookup

    

    KB accessor to resolve protein names via manually maintained KBs.

44. final def ne(arg0: AnyRef): Boolean

    

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45. final def notify(): Unit

    

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46. final def notifyAll(): Unit

    

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47. def staticBioProcessKBML: IMKBMentionLookup

    

    KB accessor to resolve bio process names via static KB.

48. def staticCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via static KB.

49. def staticCellLocationKBML2: IMKBMentionLookup

    

    KB accessor to resolve alternate subcellular location names via static KB.

50. def staticChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via static KB.

51. def staticMetaboliteKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (metabolite) names via static KB.

52. def staticProteinFamilyKBML: IMKBFamilyMentionLookup

    

    KB accessor to resolve protein family names via static KB.

53. def staticProteinKBML: IMKBProteinMentionLookup

    

    KB accessor to resolve protein names via static KB.

54. def staticTissueTypeKBML: IMKBMentionLookup

    

    KB accessor to resolve tissue type names via static KB.

55. final def synchronized[T0](arg0: ⇒ T0): T0

    

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56. def toString(): String

    

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57. final def wait(): Unit

    

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58. final def wait(arg0: Long, arg1: Int): Unit

    

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59. final def wait(arg0: Long): Unit

    

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