MITREfilter
AssemblyExporter
MODIFICATION_EVENTS
MentionManager
MODIFIER_LABELS
DarpaActions
ManualCellLocation
ReachIMKBMentionLookups
ManualCellLocationFilename
ReachKBConstants
ManualChemical
ReachIMKBMentionLookups
ManualChemicalFilename
ReachKBConstants
ManualProtein
ReachIMKBMentionLookups
ManualProteinFamily
ReachIMKBMentionLookups
ManualProteinFamilyFilename
ReachKBConstants
ManualProteinFilename
ReachKBConstants
MentionCacheValue
export
MentionFilter
reach
MentionManager
export
MentionOps
mentions
MentionOrdering
MentionManager
ModelGendCellLocation
ReachIMKBMentionLookups
ModelGendChemical
ReachIMKBMentionLookups
ModelGendProteinAndFamily
ReachIMKBMentionLookups
Modification
mentions
Modifications
mentions
MultiValueAttribute
brat
Mutant
mentions
MutantEntity
assembly
MyXML
nxml
main
NxmlIndexer
NxmlSearcher
make
AdHocIMKBFactory
RLKBFactory
TsvIMKBFactory
makeCanonicalKey
ReachKBKeyTransforms
makeFileInKBDir
ReachKBUtils
makeFileInUserDir
ReachKBUtils
makeNamespaceId
ReachKBUtils
makePathInKBDir
ReachKBUtils
makePathInUserDir
ReachKBUtils
makeResolution
InMemoryKB
manager
Activation
AssemblyExporter
Complex
ComplexEvent
EntityEventRepresentation
Regulation
SimpleEntity
SimpleEvent
manualCellLocationKBML
ReachIMKBMentionLookups
manualChemicalKBML
ReachIMKBMentionLookups
manualProteinFamilyKBML
ReachIMKBMentionLookups
manualProteinKBML
ReachIMKBMentionLookups
matches
Modification
memberPointers
Complex
members
Complex
membersHash
Complex
memoryKB
IMKBLookup
mention
MentionCacheValue
mentionIndexSummary
AssemblyManager
mentionMgr
ReachGrounder
mentionSummary
AssemblyManager
mentionToStrings
MentionManager
mentions
RuleBasedContextEngine
reach
mergeEntries
NxmlIndexer
mergeEventMentions
MentionManager
mergedEvents
MentionManager
metaInfo
IMKBLookup
InMemoryKB
KBResolution
mkActivation
DarpaActions
mkActivationIndexCard
IndexCardOutput
mkArgType
JsonOutputter
mkArgument
IndexCardOutput
mkAssemblyModifications
AssemblyManager
mkBinding
DarpaActions
mkBindingIndexCard
IndexCardOutput
mkBindingsFromPairs
DarpaActions
mkBioMention
DarpaActions
mkCards
IndexCardOutput
mkComplexArgument
IndexCardOutput
mkContext
IndexCardOutput
mkDoc
ReachSystem
OpenSystem
mkEntities
DarpaActions
mkEventID
AssemblyExporter
mkEventModification
IndexCardOutput
mkEventType
JsonOutputter
mkFeatures
IndexCardOutput
mkHedging
IndexCardOutput
mkIdentifier
IndexCardOutput
mkIndexCard
IndexCardOutput
mkIndexCardFileName
IndexCardOutput
mkModificationIndexCard
IndexCardOutput
mkMutantFeature
IndexCardOutput
mkNERMentions
DarpaActions
mkPTMFeature
IndexCardOutput
mkRegulation
DarpaActions
mkRegulationIndexCard
IndexCardOutput
mkResponse
ApiRuler
mkRules
RuleReader
mkSingleArgument
IndexCardOutput
mkTokenConstraint
PathFinder
mkTokenConstraints
PathFinder
mkTranslocationIndexCard
IndexCardOutput
mkUbiquitination
DarpaActions
model
Fragmenter
modificationEngine
ReachSystem
modificationFeatures
PhysicalEntityUtils
modificationRules
ReachSystem
modifications
SimpleEntity
Rules
Modifications
modificationsMasterFile
RuleReader
modsHash
SimpleEntity
modulations
Fragmenter
molecularInteractions
Fragmenter
mutantProteinMatch
DarpaLinks
mutantType
MutantEntity
mutants
Modifications
mutationsToMentions
ReachSystem