SEMANTIC_NEGATIVE_PATTERN
DarpaActions
SEP
CSVParser
Sieve
assembly
SieveMixture
assembly
SieveUtils
assembly
Sieves
assembly
SimpleEntity
assembly
SimpleEvent
assembly
SimplePhysicalEntityUtils
fragmenter
Speciated
grounding
SpeciesNameSet
Speciated
StaticBioProcess
ReachIMKBMentionLookups
StaticBioProcessFilename
ReachKBConstants
StaticCellLocation
ReachIMKBMentionLookups
StaticCellLocation2
ReachIMKBMentionLookups
StaticCellLocation2Filename
ReachKBConstants
StaticCellLocationFilename
ReachKBConstants
StaticChemical
ReachIMKBMentionLookups
StaticChemicalFilename
ReachKBConstants
StaticMetabolite
ReachIMKBMentionLookups
StaticMetaboliteFilename
ReachKBConstants
StaticProtein
ReachIMKBMentionLookups
StaticProteinFamily
ReachIMKBMentionLookups
StaticProteinFamilyFilename
ReachKBConstants
StaticProteinFilename
ReachKBConstants
StaticTissueTypeFilename
ReachKBConstants
StringList
JsonOutputter
sameEntityID
DarpaActions
saveDocs
NxmlSearcher
saveIds
NxmlSearcher
saveNxml
NxmlSearcher
search
NxmlSearcher
searchByField
NxmlSearcher
searchByIds
NxmlSearcher
searcher
NxmlSearcher
section
NxmlEntry
sectionId
FriesEntry
sectionIdColumn
ReachCSV
sectionName
FriesEntry
seen
Row
selectASpecies
ReachKBUtils
selectByNotSpecies
ReachKBUtils
selectBySpecies
ReachKBUtils
selectHuman
ReachKBUtils
selectNoSpecies
ReachKBUtils
selectNotASpecies
ReachKBUtils
selectNotHuman
ReachKBUtils
sentenceEndCharacterOffset
MentionManager
sentenceStartCharacterOffset
MentionManager
seqNum
MentionCacheValue
serMentionsPath
AssembleFromDataset
sieves
Anaphoric
simpleEventMatch
DarpaLinks
simpleMembers
ComplexUtils
sista
arizona
site
PTM EventSite PTM
siteArgs
MentionOps
siteSniffer
DarpaActions
skipQuotedString
CSVParser
skipWhiteSpaces
CSVParser
sortMentionsByController
DarpaActions
sortMentionsToStrings
MentionManager
sortedContextEntries
ContextEngine
sourceArgs
MentionOps
sourceFromResource
ReachKBUtils
sourceMention
Activation Complex ComplexEvent EntityEventRepresentation Regulation SimpleEntity SimpleEvent
sourceRepresentation
Row
spans
TextBound
species
KBEntry KBResolution ContextGrounding
speciesSeq
ReachEntityLookup
split
CSVParser
splitLine
CSVParser
splitSimpleEvents
DarpaActions
standardName
NamedUtils
start
Token
staticBioProcessKBML
ReachIMKBMentionLookups
staticCellLocationKBLookup
ReachIMKBLookups
staticCellLocationKBML
ReachIMKBMentionLookups
staticCellLocationKBML2
ReachIMKBMentionLookups
staticChemicalKBLookup
ReachIMKBLookups
staticChemicalKBML
ReachIMKBMentionLookups
staticMetaboliteKBLookup
ReachIMKBLookups
staticMetaboliteKBML
ReachIMKBMentionLookups
staticProteinFamilyKBLookup
ReachIMKBLookups
staticProteinFamilyKBML
ReachIMKBMentionLookups
staticProteinKBLookup
ReachIMKBLookups
staticProteinKBML
ReachIMKBMentionLookups
staticTissueTypeKBLookup
ReachIMKBLookups
staticTissueTypeKBML
ReachIMKBMentionLookups
storeEventSite
DarpaActions
storeMutants
DarpaActions
storePTM
DarpaActions
storePrecedenceRelation
AssemblyManager
strictHeadMatch
DarpaLinks
stripFamilySuffixes
ReachKBKeyTransforms
stripMutantProtein
ReachKBKeyTransforms
stripOrganCellTypeSuffixes
ReachKBKeyTransforms
stripPTMPrefixes
ReachKBKeyTransforms
stripProteinSuffixes
ReachKBKeyTransforms
stripSuffixes
KBKeyTransforms
subgraph
DependencyUtils
successors
Event
successorsOf
AssemblyManager
summarize
Complex Entity SimpleEntity
switchLabel
DarpaActions
syntaxAnnotations
RulerResults
syntaxStandoff
Brat
syntaxTokens
RulerResults
syntaxTrees
RulerResults