SimpleEntity

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

5. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

6. def containsID(someID: IDPointer): Boolean

   

   Whether or not the SimpleEntity contains the provided IDPointer.

   Whether or not the SimpleEntity contains the provided IDPointer.

   someID

   an IDPointer identifying some EntityEventRepresentation

   returns

   true or false

   Definition Classes

   SimpleEntity → EntityEventRepresentation

7. def coref: Boolean

   

   Whether or not the EntityEventRepresentation was produced by a Mention resolved through coref.

   Whether or not the EntityEventRepresentation was produced by a Mention resolved through coref.

   returns

   true or false

   Definition Classes

   EntityEventRepresentation

8. final def eq(arg0: AnyRef): Boolean

   

   Definition Classes

   AnyRef

9. def equals(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

10. def equivalenceHash: Int

    

    Used by isEquivalentTo to compare against another SimpleEntity.

    Used by isEquivalentTo to compare against another SimpleEntity.

    returns

    a hash (Int) based primarily on the grounding and modsHash

    Definition Classes

    SimpleEntity → EntityEventRepresentation

11. def evidence: Set[Mention]

    

    The Set of Mentions serving as textual evidence for this EntityEventRepresentation.

    The Set of Mentions serving as textual evidence for this EntityEventRepresentation.

    returns

    Set[Mention]

    Definition Classes

    EntityEventRepresentation

12. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

13. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

14. def getPTMs(label: String): Set[PTM]

    

    Returns the Set of assembly.PTM contained in modifications matching the given label.

    Returns the Set of assembly.PTM contained in modifications matching the given label.

    label

    the label used to filter assembly.PTM

15. def getPTMs: Set[PTM]

    

    Returns the Set of assembly.PTM contained in modifications.

16. val grounding: GroundingID

    

    GroundingID for the SimpleEntity

17. def hasCorefResolution(m: Mention): Boolean

    

    Checks to see if a coref mention has an antecedent.

    Checks to see if a coref mention has an antecedent.

    If the mentions made it through the coref component of reach, the only mentions that might have an antecedent should be those with a "Generic_*" this is just a broader, fail-safe check...

    m

    an Odin Mention

    returns

    true if cm has an antecedent; false otherwise

    Definition Classes

    EntityEventRepresentation

18. def hasNegation(m: Mention): Boolean

    

    Checks whether evidence contains a Negation modification

    Checks whether evidence contains a Negation modification

    m

    an Odin Mention

    returns

    true or false

    Definition Classes

    EntityEventRepresentation

19. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

20. def isEquivalentTo(other: Any): Boolean

    

    Used to compare against another SimpleEntity.

    Used to compare against another SimpleEntity. Based on the equality of equivalenceHash to that of another SimpleEntity.

    other

    the thing to compare against

    returns

    true or false

    Definition Classes

    SimpleEntity → EntityEventRepresentation

21. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

22. val manager: AssemblyManager

    

    a pointer to the AssemblyManager instance that produced this SimpleEntity

    a pointer to the AssemblyManager instance that produced this SimpleEntity

    Definition Classes

    SimpleEntity → EntityEventRepresentation

23. val modifications: Set[AssemblyModification]

    

    a Set of AssemblyModification, such as edu.arizona.sista.assembly.PTM and edu.arizona.sista.assembly.EntityLabel.

    a Set of AssemblyModification, such as edu.arizona.sista.assembly.PTM and edu.arizona.sista.assembly.EntityLabel. These are relevant to the identity of the SimpleEntity and describe its state (ex. Phosphorylated @ Ser123).

24. def modsHash: Int

    

    Hash representing the modifications.

    Hash representing the modifications. Used by equivalenceHash for isEquivalentTo comparisons.

    returns

    an Int hash based on the hashcodes of the modifications

25. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

26. def negated: Boolean

    

    Whether or not the EntityEventRepresentation is negated by its evidence (i.e., whether or not the evidence gives a negative example for this EntityEventRepresentation).

    Whether or not the EntityEventRepresentation is negated by its evidence (i.e., whether or not the evidence gives a negative example for this EntityEventRepresentation).

    returns

    true or false

    Definition Classes

    EntityEventRepresentation

27. final def notify(): Unit

    

    Definition Classes

    AnyRef

28. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

29. val sourceMention: Option[Mention]

    

    the Mention from which this SimpleEntity was constructed

    the Mention from which this SimpleEntity was constructed

    Definition Classes

    SimpleEntity → EntityEventRepresentation

30. def summarize: String

    

    Summary making use of grounding, modifications, coref, and manager.

    Summary making use of grounding, modifications, coref, and manager.

    returns

    a String summary of the SimpleEntity

    Definition Classes

    SimpleEntity → Entity

31. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

32. def toString(): String

    

    Definition Classes

    AnyRef → Any

33. val uniqueID: IDPointer

    

    IDPointer assigned to this SimpleEntity by the AssemblyManager

    IDPointer assigned to this SimpleEntity by the AssemblyManager

    Definition Classes

    SimpleEntity → EntityEventRepresentation

34. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

35. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

36. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

37. def withSameGrounding: Set[SimpleEntity]

    

    Find SimpleEntities with simple same grounding