edu.arizona.sista.reach.nxml.indexer

NxmlSearcher

Related Docs: object NxmlSearcher | package indexer

class NxmlSearcher extends AnyRef

Searches the NXML index created by NXML indexer User: mihais Date: 10/19/15

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Instance Constructors

  1. new NxmlSearcher(indexDir: String)

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )
  6. def close(): Unit

  7. def countDocsContaining(eventDocs: Set[(Int, Float)], token: String): Int

  8. def docs(ids: Set[(Int, Float)]): Set[(Document, Float)]

  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. val indexDir: String

  15. def intersection(s1: Set[(Int, Float)], s2: Set[(Int, Float)]): Set[(Int, Float)]

  16. final def isInstanceOf[T0]: Boolean

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  17. final def ne(arg0: AnyRef): Boolean

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  18. final def notify(): Unit

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  19. final def notifyAll(): Unit

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  20. val proc: BioNLPProcessor

  21. val reader: DirectoryReader

  22. def saveDocs(resultDir: String, docIds: Set[(Int, Float)]): Unit

  23. def saveIds(docs: Set[(Document, Float)]): Unit

  24. def saveNxml(resultDir: String, docs: Set[(Document, Float)], howManyToSave: Int = 0): Unit

  25. def search(query: String, totalHits: Int = TOTAL_HITS): Set[(Int, Float)]

  26. def searchByField(query: String, field: String, analyzer: Analyzer, totalHits: Int = TOTAL_HITS, verbose: Boolean = true): Set[(Int, Float)]

  27. def searchByIds(ids: Array[String], resultDir: String): Unit

  28. val searcher: IndexSearcher

  29. final def synchronized[T0](arg0: ⇒ T0): T0

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  30. def toString(): String

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  31. def union(s1: Set[Int], s2: Set[Int]): Set[Int]

  32. def useCase(resultDir: String): Unit

  33. def useCase2(resultDir: String): Unit

    Finds all NXML that contain at least one biochemical interaction

  34. def useCase3(resultDir: String): Unit

  35. final def wait(): Unit

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  36. final def wait(arg0: Long, arg1: Int): Unit

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  37. final def wait(arg0: Long): Unit

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