IndexCardOutput

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def addLocation(f: PropMap, prefix: String, loc: CorefMention): Unit

   

5. def addMeta(f: PropMap, mention: CorefMention, paperId: String, startTime: Date, endTime: Date): Unit

   

6. def addMutation(f: PropMap, base: String, site: Int): Unit

   

7. def addUnspecifiedMutation(f: PropMap): Unit

   

8. final def asInstanceOf[T0]: T0

   

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9. def clone(): AnyRef

   

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   protected[java.lang]

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   @throws( ... )

10. final def eq(arg0: AnyRef): Boolean

    

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11. def equals(arg0: Any): Boolean

    

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12. def finalize(): Unit

    

    Attributes

    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

13. final def getClass(): Class[_]

    

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14. def hashCode(): Int

    

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15. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

16. def mkActivationIndexCard(mention: CorefMention): Option[PropMap]

    

    Creates a card for an activation event

17. def mkArgument(arg: CorefMention): Any

    

18. def mkBindingIndexCard(mention: CorefMention): Option[PropMap]

    

    Creates a card for a complex-assembly event

19. def mkCards(paperId: String, allMentions: Seq[Mention], startTime: Date, endTime: Date): Iterable[PropMap]

    

    Creates annotations from all events read from this paper.

    Creates annotations from all events read from this paper. This needs to be done in 2 passes: 1) save recursive events 2) save simple events that are not part of recursive events

20. def mkComplexArgument(complex: CorefMention): FrameList

    

21. def mkContext(f: PropMap, mention: CorefMention): Unit

    

    Add the properties of the given context map to the given property map.

22. def mkEventModification(mention: CorefMention): PropMap

    

23. def mkFeatures(arg: CorefMention): FrameList

    

24. def mkHedging(f: PropMap, mention: CorefMention): Unit

    

25. def mkIdentifier(grounding: KBResolution): String

    

26. def mkIndexCard(mention: CorefMention): Option[PropMap]

    

    Main annotation dispatcher method.

27. def mkIndexCardFileName(paperId: String, count: Int): String

    

    Return a new filename for each card.

28. def mkModificationIndexCard(mention: CorefMention, positiveModification: Boolean = true): Option[PropMap]

    

    Creates a card for a simple, modification event

29. def mkMutantFeature(m: Mutant): PropMap

    

30. def mkPTMFeature(ptm: PTM): PropMap

    

31. def mkRegulationIndexCard(mention: CorefMention, simpleEventsInRegs: HashSet[Mention]): Option[PropMap]

    

    Creates a card for a regulation event

32. def mkSingleArgument(arg: CorefMention): PropMap

    

33. def mkTranslocationIndexCard(mention: CorefMention): Option[PropMap]

    

    Creates a card for a translocation event

34. final def ne(arg0: AnyRef): Boolean

    

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35. final def notify(): Unit

    

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36. final def notifyAll(): Unit

    

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37. final def synchronized[T0](arg0: ⇒ T0): T0

    

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38. def toJSON(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, outFilePrefix: String): String

    

    Returns the given mentions in the index-card JSON format, as one big string.

    Returns the given mentions in the index-card JSON format, as one big string. All index cards are concatenated into a single JSON string.

    Definition Classes

    IndexCardOutput → JsonOutputter

39. def toString(): String

    

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    AnyRef → Any

40. final def wait(): Unit

    

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    Annotations

    @throws( ... )

41. final def wait(arg0: Long, arg1: Int): Unit

    

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42. final def wait(arg0: Long): Unit

    

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43. def writeJSON(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, outFilePrefix: String): Unit

    

    Writes the given mentions to output files in Fries JSON format.

    Writes the given mentions to output files in Fries JSON format. Separate output files are written for sentences, entities, and events. Each output file is prefixed with the given prefix string.

    Definition Classes

    IndexCardOutput → JsonOutputter