edu.arizona.sista.reach.apis

Api

Related Doc: package apis

object Api

External interface class to accept and process text strings and NXML documents, returning Reach results as a sequence of BioMentions. Author: Tom Hicks. 10/19/2015. Last Modified: Initial creation, after api ruler class.

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Type Members

  1. type JReachResults = List[BioMention]

  2. type ReachResults = Seq[BioMention]

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    protected[java.lang]
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  6. val config: Config

  7. val encoding: String

  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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  12. def hashCode(): Int

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  13. val ignoreSections: List[String]

  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. val reach: ReachSystem

  19. val reader: NxmlReader

  20. def runOnFriesEntry(entry: FriesEntry): ReachResults

    Annotates a single FriesEntry and returns Reach results.

  21. def runOnFriesEntryToJava(entry: FriesEntry): JReachResults

    Annotates a single FriesEntry and returns Reach results.

  22. def runOnNxml(nxml: String): ReachResults

    Extracts raw text from given nxml string and returns Reach results.

  23. def runOnNxmlToJava(nxml: String): JReachResults

    Extracts raw text from given nxml string and returns Java Reach results.

  24. def runOnText(text: String, docId: String = Prefix, chunkId: String = Suffix): ReachResults

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntry().

  25. def runOnText(text: String): ReachResults

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntry().

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntry(). Uses fake document ID and chunk ID.

  26. def runOnTextToJava(text: String, docId: String = Prefix, chunkId: String = Suffix): JReachResults

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava().

  27. def runOnTextToJava(text: String): JReachResults

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava().

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava(). Uses fake document ID and chunk ID.

  28. final def synchronized[T0](arg0: ⇒ T0): T0

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  29. def toString(): String

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  30. final def wait(): Unit

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  31. final def wait(arg0: Long, arg1: Int): Unit

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  32. final def wait(arg0: Long): Unit

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